STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_0421PFAM: protein of unknown function DUF466; KEGG: bur:Bcep18194_B0098 protein of unknown function DUF466. (66 aa)    
Predicted Functional Partners:
Rxyl_0422
PFAM: carbon starvation protein CstA; KEGG: fra:Francci3_2468 carbon starvation protein CstA.
 
  
 0.985
Rxyl_0423
PFAM: ABC-2 type transporter; KEGG: sai:Saci_0388 conserved archaeal membrane protein.
       0.540
Rxyl_0424
PFAM: ABC transporter related; SMART: ATPase; KEGG: ape:APE2579 putative ABC-2 type transport system ATP-binding protein.
       0.540
Rxyl_2744
PFAM: cobalamin synthesis protein, P47K cobalamin synthesis CobW-like; KEGG: mag:amb2306 putative GTPase.
  
  
 0.522
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.