STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_0437PFAM: monooxygenase, FAD-binding FAD dependent oxidoreductase; KEGG: ava:Ava_2049 hypothetical protein. (423 aa)    
Predicted Functional Partners:
Rxyl_0439
PFAM: ABC transporter related; SMART: ATPase; KEGG: chy:CHY_0900 daunorubicin resistance ABC transporter, ATP-binding protein.
   
 
 0.774
Rxyl_0440
PFAM: regulatory protein, TetR; KEGG: sth:STH2255 TetR family transcriptional regulator.
   
 
 0.768
Rxyl_0438
PFAM: ABC-2 type transporter; KEGG: det:DET0814 ABC transporter, permease protein.
       0.762
Rxyl_2705
PFAM: monooxygenase, FAD-binding FAD dependent oxidoreductase; KEGG: nfa:nfa11030 putative monooxygenase.
  
     0.607
Rxyl_0286
PFAM: monooxygenase, FAD-binding FAD dependent oxidoreductase; KEGG: ava:Ava_1825 hypothetical protein.
 
   
 0.550
Rxyl_0441
PFAM: Amylo-alpha-1,6-glucosidase; KEGG: sco:SCO7493 hypothetical protein.
       0.520
Rxyl_1032
PFAM: cytochrome P450; KEGG: mpa:MAP3818 hypothetical protein.
 
 
 0.492
Rxyl_2765
PFAM: NUDIX hydrolase; KEGG: cac:CAC0446 hydrolase of MutT (Nudix) family.
   
  
 0.488
Rxyl_0442
Hypothetical protein.
       0.456
Rxyl_0049
PFAM: Transketolase-like Transketolase, central region; KEGG: ana:all4052 transketolase.
 
   
 0.453
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
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