STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_0505Transcriptional regulator, AsnC family; SMART: regulatory proteins, AsnC/Lrp; KEGG: tdn:Tmden_1976 putative transcriptional regulator, AsnC family. (353 aa)    
Predicted Functional Partners:
Rxyl_0506
PFAM: protein of unknown function DUF81; KEGG: rpb:RPB_1485 protein of unknown function DUF81.
       0.747
Rxyl_1977
uroporphyrinogen-III C-methyltransferase / uroporphyrinogen-III synthase; TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase Uroporphyrinogen III synthase HEM4; KEGG: mta:Moth_1248 uroporphyrin-III C-methyltransferase.
 
  
 0.673
Rxyl_1070
PFAM: Rubrerythrin Ferritin and Dps; KEGG: mmp:MMP1172 hypothetical protein.
  
     0.640
Rxyl_1474
KEGG: cef:CE1727 hypothetical protein.
  
  
 0.573
Rxyl_0507
PFAM: major facilitator superfamily MFS_1; KEGG: rso:RS00896 probable transport transmembrane protein.
       0.547
Rxyl_0341
PFAM: glutamine amidotransferase, class-II glutamate synthase, alpha subunit-like ferredoxin-dependent glutamate synthase glutamate synthase; KEGG: mca:MCA2039 glutamate synthase, large subunit.
     
 0.527
Rxyl_0503
TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: syf:Synpcc7942_2543 phage SPO1 DNA polymerase-related protein.
       0.522
Rxyl_0504
PFAM: glucose sorbosone dehydrogenase; KEGG: cbu:CBU_0368 hypothetical protein.
       0.522
Rxyl_1023
PFAM: glycosyl transferase, group 1; KEGG: dps:DP0309 similar to hexosyltransferase.
  
     0.509
Rxyl_2694
PFAM: O-antigen polymerase; KEGG: ade:Adeh_2640 O-antigen polymerase.
  
     0.509
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
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