STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_0624PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: sth:STH292 hypothetical protein. (296 aa)    
Predicted Functional Partners:
murQ
Sugar isomerase (SIS); Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate.
  
 0.940
Rxyl_0623
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_06980 ABC-type sugar transport system, permease component.
       0.790
Rxyl_0622
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc02872 putative permease ABC transporter protein.
       0.780
Rxyl_0621
PFAM: extracellular solute-binding protein, family 1; KEGG: lxx:Lxx17590 sugar ABC transporter, sugar-binding protein.
 
    0.735
Rxyl_0628
PFAM: Uncharacterised conserved protein UCP016719; KEGG: sma:SAV6610 hypothetical protein.
 
    0.670
Rxyl_0629
PFAM: glycoside hydrolase, family 3-like; KEGG: sma:SAV5302 putative beta-N-acetylglucosaminidase; Belongs to the glycosyl hydrolase 3 family.
 
    0.593
Rxyl_0658
KEGG: sth:STH1280 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase.
 
   
 0.528
Rxyl_0627
PFAM: beta-lactamase; KEGG: sco:SCO7243 secreted protein.
 
    0.513
Rxyl_0618
Aconitase; TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase-like; KEGG: tth:TTC0374 aconitate hydratase.
 
     0.439
Rxyl_1993
PFAM: glycoside hydrolase, family 3-like; KEGG: tfu:Tfu_2486 beta-N-acetylglucosaminidase (putative secreted protein).
 
    0.438
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
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