STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_0861PFAM: metal-dependent phosphohydrolase, HD subdomain; KEGG: chy:CHY_0160 HDIG domain protein. (453 aa)    
Predicted Functional Partners:
Rxyl_1060
Diguanylate cyclase; TIGRFAM: GGDEF domain; PFAM: GGDEF; KEGG: sth:STH566 putative sensory box/GGDEF domain protein.
 
 0.768
Rxyl_2783
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); KEGG: syn:slr0359 hypothetical protein; TIGRFAM: GGDEF domain; PFAM: GGDEF EAL GAF PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif.
  
 0.710
Rxyl_1156
Diguanylate cyclase/phosphodiesterase; TIGRFAM: GGDEF domain; PFAM: GGDEF EAL; KEGG: ana:all1175 hypothetical protein.
 
 
 0.698
Rxyl_2666
Diguanylate cyclase; PFAM: GGDEF GAF; KEGG: tte:TTE2335 diguanylate cyclase/phosphodiesterase domain 1 (GGDEF).
 
 
 0.649
Rxyl_2092
KEGG: tbd:Tbd_1269 putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) and response regulator receiver modulation; TIGRFAM: GGDEF domain; PFAM: GGDEF EAL PAS fold-4 PAS fold; SMART: PAS.
   
 0.584
Rxyl_1232
Diguanylate cyclase; TIGRFAM: GGDEF domain; PFAM: GGDEF; KEGG: ttj:TTHA0989 GGDEF domain protein.
 
 
 0.568
Rxyl_0492
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: tel:tll0627 hypothetical protein; TIGRFAM: GGDEF domain; PFAM: GGDEF EAL PAS fold-3 PAS fold; SMART: PAS PAC motif.
   
 0.562
Rxyl_1544
Diguanylate cyclase/phosphodiesterase; TIGRFAM: GGDEF domain; PFAM: GGDEF EAL; KEGG: tel:tll0627 hypothetical protein.
   
 0.547
Rxyl_2663
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif; KEGG: cyb:CYB_1640 sensory box histidine kinase/response regulator.
 
  
 0.542
Rxyl_1268
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif; KEGG: mag:amb3438 sensor protein GacS.
 
  
 0.537
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
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