STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_1014PFAM: histone deacetylase superfamily; KEGG: gka:GK2809 acetoin utilization protein. (387 aa)    
Predicted Functional Partners:
Rxyl_1013
CBS domain containing membrane protein; PFAM: CBS amino acid-binding ACT; KEGG: ttj:TTHA0474 acetoin utilization protein AcuB (acetoin dehydrogenase).
 
    0.862
clpS
ATP-dependent Clp protease adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.
       0.655
cobB-2
PFAM: Silent information regulator protein Sir2; KEGG: pai:PAE3500 NAD-dependent deacetylase; Belongs to the sirtuin family. Class III subfamily.
    
 
 0.614
Rxyl_1012
Hypothetical protein.
       0.550
Rxyl_1016
PFAM: protein of unknown function DUF894, DitE major facilitator superfamily MFS_1; KEGG: sma:SAV6301 putative antibiotic transport protein.
       0.498
Rxyl_1017
PFAM: metal-dependent phosphohydrolase, HD subdomain; KEGG: sma:SAV3036 hypothetical protein.
       0.460
Rxyl_0029
Transcriptional regulator, AsnC family; PFAM: regulatory proteins, AsnC/Lrp; KEGG: sma:SAV6058 putative transcriptional regulator.
 
     0.443
Rxyl_0937
CBS domain containing membrane protein; PFAM: CBS amino acid-binding ACT; KEGG: chy:CHY_0173 acetoin utilization protein AcuB.
 
    0.423
Rxyl_0019
PFAM: beta-lactamase-like RNA-metabolising metallo-beta-lactamase; KEGG: pfu:PF1405 cleavage and polyadenylation specifity factor protein.
   
 0.418
Rxyl_0837
KEGG: tfu:Tfu_0614 D-3-phosphoglycerate dehydrogenase; TIGRFAM: D-3-phosphoglycerate dehydrogenase; PFAM: amino acid-binding ACT D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
    
 0.409
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
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