STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_1051PFAM: iron-containing alcohol dehydrogenase; KEGG: nar:Saro_2455 iron-containing alcohol dehydrogenase. (340 aa)    
Predicted Functional Partners:
Rxyl_1578
TIGRFAM: 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; KEGG: tfu:Tfu_0874 alpha/beta hydrolase.
     
 0.903
Rxyl_2443
PFAM: alpha/beta hydrolase fold; KEGG: tte:TTE0552 predicted hydrolase or acyltransferase (alpha/beta hydrolase superfamily).
     
 0.903
Rxyl_0205
PFAM: intradiol ring-cleavage dioxygenase Catechol dioxygenase-like; KEGG: atc:AGR_C_4592 hypothetical protein.
  
 0.819
Rxyl_1052
Lactate 2-monooxygenase; PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: tth:TTC1744 lactate 2-monooxygenase.
  
  
 0.778
Rxyl_1758
PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: nmu:Nmul_A1473 zinc-containing alcohol dehydrogenase superfamily.
   
 
 0.774
Rxyl_3153
PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: nfa:nfa11970 putative dehydrogenase.
   
 
 0.774
Rxyl_1050
PFAM: NADPH-dependent FMN reductase flavodoxin/nitric oxide synthase; KEGG: oih:OB3102 trp repressor binding protein; Belongs to the WrbA family.
       0.674
Rxyl_0056
PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: gsu:GSU0573 alcohol dehydrogenase, zinc-containing.
  
 
 0.584
Rxyl_0543
PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: bja:blr3675 putative alcohol dehydrogenase.
  
 
 0.584
Rxyl_1958
PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: fra:Francci3_2514 alcohol dehydrogenase, zinc-binding.
  
 
 0.584
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
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