STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_1150Hypothetical protein. (115 aa)    
Predicted Functional Partners:
Rxyl_1149
Hypothetical protein.
       0.782
Rxyl_1152
PFAM: histone deacetylase superfamily; KEGG: dar:Daro_2377 histone deacetylase superfamily.
  
    0.618
Rxyl_1151
PFAM: FAD dependent oxidoreductase; KEGG: syn:sll1135 hypothetical protein.
       0.613
Rxyl_1153
PFAM: protein of unknown function DUF72; KEGG: sat:SYN_01732 hypothetical cytosolic protein.
       0.448
Rxyl_1154
Peptidase A24A-like protein; PFAM: peptidase A24A, prepilin type IV peptidase A24A-like; KEGG: mta:Moth_1550 peptidase A24A-like.
       0.448
rpmE2
PFAM: ribosomal protein L31; KEGG: sco:SCO3427 putative 50S ribosomal protein L31.
  
 
 0.433
rpsL
SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy.
   
 
 0.408
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
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