STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_1230PFAM: phosphoesterase, PA-phosphatase related; KEGG: sma:SAV1501 hypothetical protein. (206 aa)    
Predicted Functional Partners:
Rxyl_1229
PFAM: beta-lactamase-like; KEGG: mba:Mbar_A3142 metal dependent hydrolase.
       0.780
Rxyl_1231
RNA polymerase, sigma 28 subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.553
Rxyl_1032
PFAM: cytochrome P450; KEGG: mpa:MAP3818 hypothetical protein.
   
 0.497
rplF
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
  0.440
Rxyl_0793
Putative GAF sensor protein; PFAM: glycosyl transferase, family 2 GAF GtrA-like protein; KEGG: tko:TK1909 dolichol-phosphate mannosyltransferase, fused to membrane-bound GtrA-like domain.
 
   
 0.421
Rxyl_1970
PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: nar:Saro_0302 TPR repeat protein.
 
     0.405
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
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