STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_1237PFAM: polysaccharide biosynthesis protein; KEGG: mpa:MAP0433c hypothetical protein. (428 aa)    
Predicted Functional Partners:
Rxyl_2694
PFAM: O-antigen polymerase; KEGG: ade:Adeh_2640 O-antigen polymerase.
 
  
 0.829
Rxyl_1238
PFAM: glycosyl transferase, family 2; KEGG: gka:GK2679 dolichyl-phosphate mannose synthase.
 
  
 0.818
Rxyl_1023
PFAM: glycosyl transferase, group 1; KEGG: dps:DP0309 similar to hexosyltransferase.
 
  
 0.813
Rxyl_3115
PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: gvi:gll0969 UDP-glucose dehydrogenase.
  
  
 0.774
Rxyl_3120
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.774
Rxyl_3122
TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: mca:MCA1282 dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.774
Rxyl_3121
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.773
Rxyl_1070
PFAM: Rubrerythrin Ferritin and Dps; KEGG: mmp:MMP1172 hypothetical protein.
  
    0.770
Rxyl_0571
PFAM: sugar transferase; KEGG: noc:Noc_1508 undecaprenyl-phosphate galactosephosphotransferase.
  
  
 0.761
Rxyl_1952
PFAM: O-antigen polymerase; KEGG: mta:Moth_1253 O-antigen polymerase.
 
     0.759
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
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