STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_1554KEGG: mlo:mlr3415 hypothetical protein. (251 aa)    
Predicted Functional Partners:
Rxyl_1555
KEGG: lin:lin1013 highly similar to glycine betaine ABC transporter (ATP-binding protein); TIGRFAM: glycine betaine/L-proline transport ATP binding subunit; PFAM: CBS ABC transporter related; SMART: ATPase.
       0.732
Rxyl_1556
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bth:BT1750 glycine betaine/L-proline transport system permease.
       0.568
Rxyl_1553
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: gvi:glr3360 LysR family transcriptional regulatory protein.
       0.475
Rxyl_1557
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: bur:Bcep18194_B0580 ABC proline/glycine betaine transporter, periplasmic ligand binding protein.
       0.457
Rxyl_1558
Sarcosine oxidase; PFAM: FAD dependent oxidoreductase; KEGG: sma:SAV6950 putative sarcosine oxidase.
       0.409
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
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