STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_1663PFAM: beta-lactamase-like; KEGG: dps:DP2606 hypothetical protein. (274 aa)    
Predicted Functional Partners:
rlmH
Protein of unknown function DUF163; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
 
     0.828
Rxyl_1664
PFAM: peptidase C60, sortase A and B; KEGG: cpe:CPE2315 sortase, putative.
       0.572
Rxyl_1665
TIGRFAM: Twin-arginine translocation pathway signal; KEGG: tth:TT_P0169 hypothetical protein.
       0.572
Rxyl_1666
TIGRFAM: Twin-arginine translocation pathway signal; KEGG: ttj:TTHB213 hypothetical protein.
       0.568
Rxyl_0341
PFAM: glutamine amidotransferase, class-II glutamate synthase, alpha subunit-like ferredoxin-dependent glutamate synthase glutamate synthase; KEGG: mca:MCA2039 glutamate synthase, large subunit.
     
 0.430
Rxyl_2293
PFAM: ABC transporter related; SMART: ATPase; KEGG: pca:Pcar_2038 ABC transporter, ATP-binding protein.
  
  
 0.420
Rxyl_1668
KEGG: sco:SCO0633 hypothetical protein.
       0.412
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
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