STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_1671TIGRFAM: UV-endonuclease uvde; PFAM: UV-endonuclease UvdE; KEGG: tth:TT_P0052 probable UV endonuclease. (321 aa)    
Predicted Functional Partners:
Rxyl_1672
PFAM: CoA-binding; KEGG: mag:amb2851 protein YccU.
       0.773
Rxyl_1673
TIGRFAM: haloacid dehalogenase, type II HAD-superfamily hydrolase, subfamily IA, variant 2; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: ilo:IL1575 L-2-haloalkanoic acid dehalogenase, HAD superfamily.
 
     0.697
Rxyl_1674
KEGG: dde:Dde_1863 hypothetical protein.
       0.644
Rxyl_1670
KEGG: rpb:RPB_0495 putative ammonia monooxygenase.
       0.608
Rxyl_1666
TIGRFAM: Twin-arginine translocation pathway signal; KEGG: ttj:TTHB213 hypothetical protein.
 
     0.606
Rxyl_1675
PFAM: carbohydrate kinase, FGGY; KEGG: gka:GK1941 gluconokinase; Belongs to the FGGY kinase family.
       0.587
Rxyl_1665
TIGRFAM: Twin-arginine translocation pathway signal; KEGG: tth:TT_P0169 hypothetical protein.
 
     0.584
Rxyl_2037
PFAM: rhodopsin; KEGG: hma:rrnAC3161 bacteriorhodopsin.
  
     0.476
Rxyl_1669
PFAM: protein of unknown function DUF1458; KEGG: jan:Jann_3624 protein of unknown function DUF1458.
       0.454
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.