STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_1832PFAM: Methyltransferase type 11 Methyltransferase type 12; KEGG: chy:CHY_0552 hypothetical protein. (203 aa)    
Predicted Functional Partners:
Rxyl_1831
TIGRFAM: thioredoxin; PFAM: glutaredoxin Thioredoxin domain; KEGG: mta:Moth_0927 thioredoxin; Belongs to the thioredoxin family.
   
 
 0.800
Rxyl_1830
PFAM: multicopper oxidase, type 1 multicopper oxidase, type 2 multicopper oxidase, type 3; KEGG: nfa:pnf1230 putative multicopper oxidase.
       0.536
Rxyl_1032
PFAM: cytochrome P450; KEGG: mpa:MAP3818 hypothetical protein.
    
 
 0.400
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.