STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_1898Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH UbiC transcription regulator-associated; KEGG: ecs:ECs4349 putative GntR family regulatory protein. (263 aa)    
Predicted Functional Partners:
Rxyl_0929
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: dvu:DVU2785 transcriptional regulator, GntR family.
  
    0.646
Rxyl_2589
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: mta:Moth_1310 regulatory protein GntR, HTH.
  
    0.617
Rxyl_0527
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: mta:Moth_2304 GntR-like.
  
    0.611
Rxyl_1852
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: pca:Pcar_2500 transcriptional regulator-like.
  
    0.559
Rxyl_1896
PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: sso:SSO2243 purine nucleosidase, putative (IunH-2).
 
   
 0.557
Rxyl_0539
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: mta:Moth_2304 GntR-like.
  
    0.544
Rxyl_2909
Transcriptional regulator, MerR family; PFAM: regulatory protein, MerR helix-turn-helix motif Cupin 2, conserved barrel; KEGG: chy:CHY_0677 transcriptional regulator, MerR family.
 
  
 0.540
Rxyl_0658
KEGG: sth:STH1280 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase.
 
  
 0.522
Rxyl_0554
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: mta:Moth_1310 regulatory protein GntR, HTH.
  
    0.510
Rxyl_3004
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: sma:SAV6651 putative GntR-family transcriptional regulator.
  
    0.505
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.