STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_1965PFAM: conserved hypothetical protein 374; KEGG: mba:Mbar_A1413 hypothetical protein. (320 aa)    
Predicted Functional Partners:
Rxyl_1966
PFAM: UbiA prenyltransferase; KEGG: mta:Moth_1995 UbiA prenyltransferase; Belongs to the UbiA prenyltransferase family.
 
     0.918
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
       0.698
Rxyl_0055
PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: mlo:mll9007 hypothetical protein.
 
     0.597
Rxyl_2361
KEGG: syf:Synpcc7942_1526 hypothetical protein.
  
     0.555
menA
1,4-Dihydroxy-2-naphtoate prenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily.
       0.553
Rxyl_0862
KEGG: ade:Adeh_2860 hypothetical protein.
 
  
 0.512
Rxyl_1254
KEGG: sma:SAV4116 putative membrane protein.
  
     0.498
Rxyl_1180
TIGRFAM: conserved hypothetical protein; KEGG: gka:GK2681 hypothetical protein.
  
     0.484
Rxyl_3066
PFAM: FAD linked oxidase-like; KEGG: chy:CHY_2037 cysteine-rich domain protein/FAD binding domain protein.
 
     0.451
Rxyl_1963
Peptidase C26; PFAM: glutamine amidotransferase class-I peptidase C26; KEGG: sth:STH2933 putative glutamine amidotransferase.
       0.422
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.