STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_2001PFAM: peptidase S45, penicillin amidase; KEGG: ttj:TTHA0024 penicillin acylase II precursor. (770 aa)    
Predicted Functional Partners:
Rxyl_1712
PFAM: beta-lactamase; KEGG: tel:tll2115 probable beta-lactamase.
  
  
  0.911
Rxyl_0408
L-lysine 6-monooxygenase (NADPH); KEGG: ava:Ava_2835 probable monooxygenase.
  
  
 0.506
Rxyl_2002
Protein translocase subunit secG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
       0.413
Rxyl_1038
Aromatic-L-amino-acid decarboxylase; PFAM: aminotransferase, class V aromatic amino acid beta-eliminating lyase/threonine aldolase Pyridoxal-dependent decarboxylase; KEGG: dde:Dde_1124 aromatic amino acid decarboxylase, putative.
 
   
 0.403
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.