STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_2013PFAM: amino acid permease-associated region; KEGG: sma:SAV2243 putative cationic amino acid transporter. (501 aa)    
Predicted Functional Partners:
Rxyl_2012
PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: bld:BLi02166 hypothetical protein.
   
   0.661
Rxyl_2011
Hypothetical protein; KEGG: eba:ebA1334 carbon-nitrogen hydrolase:apolipoprotein N-acyltransferase.
       0.652
uvrC
Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
       0.589
glgE
Alpha amylase, catalytic region; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.
   
 0.560
Rxyl_0315
Trehalose synthase-like protein; KEGG: noc:Noc_0830 alpha amylase, catalytic region; TIGRFAM: Trehalose synthase-like Trehalose synthase/probable maltokinase-like; PFAM: alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain.
   
 0.560
Rxyl_3169
PFAM: alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; KEGG: rpb:RPB_0810 alpha amylase.
   
 0.560
Rxyl_2014
KEGG: ddi:DDB0190122 hypothetical protein.
       0.517
Rxyl_2009
Uncharacterised P-loop ATPase protein UPF0042; Displays ATPase and GTPase activities.
       0.404
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
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