STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_2258TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: sma:SAV1731 putative dihydrodipicolinate synthase; Belongs to the DapA family. (294 aa)    
Predicted Functional Partners:
Rxyl_2259
PFAM: proline racemase; KEGG: sco:SCO6293 hypothetical protein.
 
  
 0.905
Rxyl_0526
D-amino acid oxidase; PFAM: FAD dependent oxidoreductase; KEGG: sma:SAV1672 putative D-amino acid oxidase.
    
 0.904
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.
 
  
 0.899
Rxyl_1092
TIGRFAM: Aspartate-semialdehyde dehydrogenase, USG-1 related; PFAM: Semialdehyde dehydrogenase, NAD - binding Semialdehyde dehydrogenase, dimerisation region; KEGG: bce:BC3799 aspartate-semialdehyde dehydrogenase; Belongs to the aspartate-semialdehyde dehydrogenase family.
 
  
 0.782
Rxyl_2260
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: mlo:mlr7144 transcriptional regulator.
       0.763
Rxyl_2256
PFAM: FAD dependent oxidoreductase; KEGG: xcb:XC_1538 D-amino acid dehydrogenase subunit.
 
   
 0.719
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
  
 0.691
Rxyl_2257
PFAM: aldehyde dehydrogenase; KEGG: bcl:ABC1114 aldehyde dehydrogenase.
  
  
 0.678
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
 
  
 0.658
Rxyl_2251
PFAM: proline racemase; KEGG: bur:Bcep18194_B1660 proline racemase; Belongs to the proline racemase family.
 
  
 0.626
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
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