STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_2367TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily; KEGG: ade:Adeh_1639 4-hydroxybenzoyl-CoA thioesterase. (115 aa)    
Predicted Functional Partners:
Rxyl_2027
TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily; KEGG: pae:PA5329 hypothetical protein.
  
     0.680
Rxyl_2368
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: tte:TTE0544 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
    0.664
Rxyl_2453
PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: sru:SRU_1459 fatty oxidation complex, alpha subunit; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.620
Rxyl_2365
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: gvi:gll0669 RNA polymerase sigma-70 factor.
     
 0.571
Rxyl_2364
PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: tfu:Tfu_0093 hypothetical protein.
       0.545
Rxyl_2366
Hypothetical protein.
       0.545
Rxyl_2362
KEGG: nfa:nfa22990 hypothetical protein.
       0.534
Rxyl_2363
Hypothetical protein.
       0.534
Rxyl_1379
PFAM: acyl transferase region; KEGG: sru:SRU_0043 malonyl CoA-acyl carrier protein transacylase.
 
 
 0.531
Rxyl_3058
PFAM: acyl transferase region; KEGG: tma:TM0798 malonyl CoA-acyl carrier protein transacylase.
 
 
 0.522
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
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