STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_2554PFAM: NUDIX hydrolase; KEGG: plt:Plut_0490 NUDIX/MutT family protein; Belongs to the Nudix hydrolase family. (160 aa)    
Predicted Functional Partners:
Rxyl_2555
PFAM: Abortive infection protein; KEGG: mta:Moth_1913 abortive infection protein.
       0.773
Rxyl_2553
PFAM: molybdopterin biosynthesis MoaE; KEGG: sth:STH3180 molybdopterin converting factor-like protein.
       0.626
Rxyl_2552
TIGRFAM: molybdopterin converting factor, subunit 1 MoaD, archaeal; PFAM: thiamineS; KEGG: bbr:BB1329 molybdopterin converting factor.
       0.620
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.