STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_2661Hypothetical protein; KEGG: gme:Gmet_2251 major facilitator superfamily MFS_1. (166 aa)    
Predicted Functional Partners:
Rxyl_2660
KEGG: sco:SCO6809 integral membrane transport protein.
 
    0.829
Rxyl_2659
TIGRFAM: Putative regulatory protein, FmdB; KEGG: bbr:BB1403 hypothetical protein.
 
     0.700
Rxyl_1175
PFAM: extracellular solute-binding protein, family 1; KEGG: ana:alr1382 ferric iron transport system substrate-binding protein.
  
  
 0.482
Rxyl_2658
Formamidase; PFAM: Acetamidase/Formamidase; KEGG: sma:SAV1944 putative acetamidase.
       0.475
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.