STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_2664Putative anti-sigma regulatory factor, serine/threonine protein kinase; PFAM: ATP-binding region, ATPase-like; KEGG: mag:amb0334 serine phosphatase RsbU. (139 aa)    
Predicted Functional Partners:
Rxyl_2665
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: ava:Ava_4580 anti-sigma-factor antagonist (STAS) domain protein.
 
 
 0.974
Rxyl_2671
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: plt:Plut_1364 anti-anti-sigma regulatory factor, SpoIIAA; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.970
Rxyl_1268
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif; KEGG: mag:amb3438 sensor protein GacS.
 
  
 0.937
Rxyl_2804
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: fra:Francci3_4302 anti-sigma-factor antagonist (STAS) domain protein.
 
 
 0.936
Rxyl_2663
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif; KEGG: cyb:CYB_1640 sensory box histidine kinase/response regulator.
 
  
 0.935
Rxyl_1691
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: sma:SAV4614 putative anti-sigma factor antagonist; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.925
Rxyl_1690
Putative PAS/PAC sensor protein; PFAM: Stage II sporulation E PAS fold-4; SMART: PAS Protein phosphatase 2C-like; KEGG: sco:SCO5747 regulatory protein.
 
 
 0.922
Rxyl_2673
PFAM: response regulator receiver Stage II sporulation E; SMART: Protein phosphatase 2C-like; KEGG: mag:amb1116 serine phosphatase RsbU regulator sigma subunit.
 
 
 0.914
Rxyl_2919
Putative PAS/PAC sensor protein; PFAM: GAF Stage II sporulation E PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif Protein phosphatase 2C-like; KEGG: tfu:Tfu_0287 protein phosphatase 2C-like, withe GAF domain.
 
 
 0.874
Rxyl_1156
Diguanylate cyclase/phosphodiesterase; TIGRFAM: GGDEF domain; PFAM: GGDEF EAL; KEGG: ana:all1175 hypothetical protein.
  
 
 0.725
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.