STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_2843Urate oxidase; Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin. (294 aa)    
Predicted Functional Partners:
Rxyl_2844
PFAM: Transthyretin; KEGG: sme:SMb20872 conserved hypothetical protein, transthyretin-like protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
 
 0.996
Rxyl_2840
TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: dra:DRA0176 xanthine permease, putative.
 
  
 0.904
allB
Dihydroorotase, multifunctional complex type; Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoic acid by hydrolytic cleavage of the five-member hydantoin ring; Belongs to the metallo-dependent hydrolases superfamily. Allantoinase family.
 
  
 0.901
Rxyl_2846
KEGG: psb:Psyr_2500 hypothetical protein.
       0.787
Rxyl_2842
PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: pca:Pcar_0660 cytidine and deoxycytidylate deaminase family protein.
     
 0.782
Rxyl_2841
KEGG: dra:DR1158 hypothetical protein.
 
   
 0.769
Rxyl_2849
PFAM: Asparaginase/glutaminase; KEGG: bmb:BruAb1_1936 L-asparaginase type II, hypothetical.
     
 0.727
Rxyl_2847
PFAM: aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; KEGG: pfu:PF0599 aspartate carbamoyltransferase catalytic chain; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
       0.714
Rxyl_2848
TIGRFAM: carbamate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: mta:Moth_2117 carbamate kinase; Belongs to the carbamate kinase family.
       0.714
Rxyl_2838
PFAM: amidohydrolase Amidohydrolase 3; KEGG: nfa:nfa52410 putative hydrolase.
 
  
 0.654
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
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