STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_2957PFAM: cytochrome b/b6-like; KEGG: btk:BT9727_1405 menaquinol-cytochrome c reductase, cytochrome b subunit. (257 aa)    
Predicted Functional Partners:
Rxyl_2956
Cytochrome b subunit of the bc complex-like protein; KEGG: bld:BLi02389 menaquinolcytochrome c oxidoreductase (cytochrome b/c subunit); RBL03466.
 
  
  0.987
Rxyl_2958
PFAM: Rieske [2Fe-2S] region; KEGG: gme:Gmet_1922 Rieske (2Fe-2S) region.
 
 0.986
Rxyl_2710
Hypothetical protein; KEGG: bha:BH1674 menaquinol-cytochrome c reductase (cytochrome b/c subunit).
 
  
  0.972
Rxyl_2712
PFAM: Rieske [2Fe-2S] region; KEGG: gme:Gmet_1922 Rieske (2Fe-2S) region.
 
 0.949
Rxyl_0885
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Rieske [2Fe-2S] region; KEGG: gme:Gmet_1922 Rieske (2Fe-2S) region.
 
 0.938
Rxyl_0085
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Rieske [2Fe-2S] region; KEGG: fra:Francci3_0970 twin-arginine translocation pathway signal.
 
 0.930
Rxyl_1419
PFAM: peptidase M16-like; KEGG: mta:Moth_1059 peptidase M16-like; Belongs to the peptidase M16 family.
    
 0.911
Rxyl_2711
PFAM: cytochrome b/b6-like; KEGG: bha:BH1673 menaquinol-cytochrome c reductase (cytochrome b subunit).
  
  
 
0.901
Rxyl_1626
KEGG: gvi:gll2536 NADH dehydrogenase subunit 4; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I).
  
 
 0.898
Rxyl_0124
KEGG: gsu:GSU3430 NADH dehydrogenase I, M subunit; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I).
  
 
 0.893
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
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