STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_2993PFAM: protein of unknown function DUF162; KEGG: sth:STH93 hypothetical protein. (221 aa)    
Predicted Functional Partners:
Rxyl_2994
TIGRFAM: Iron-sulfur cluster binding protein; KEGG: bat:BAS3036 iron-sulfur cluster-binding protein.
 
0.997
Rxyl_2995
PFAM: protein of unknown function DUF224, cysteine-rich region; KEGG: sth:STH95 glycolate oxidase.
 
 
 0.981
Rxyl_2831
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding protein of unknown function DUF224, cysteine-rich region; KEGG: ava:Ava_4555 hypothetical protein.
 
 
 0.823
Rxyl_2720
FAD linked oxidase-like protein; PFAM: protein of unknown function DUF224, cysteine-rich region FAD linked oxidase-like; KEGG: noc:Noc_0464 hypothetical protein.
 
 
 0.802
Rxyl_2375
FAD linked oxidase-like protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding protein of unknown function DUF224, cysteine-rich region FAD linked oxidase-like; KEGG: gvi:glr3436 probable oxidoreductase.
 
 
 0.798
Rxyl_1264
L-lactate permease; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
 
  
 0.667
Rxyl_2996
PFAM: regulatory protein, TetR; KEGG: fra:Francci3_1116 transcriptional regulator, TetR family.
       0.550
Rxyl_2997
KEGG: pca:Pcar_1703 coenzyme F390 synthetase-like.
       0.550
Rxyl_2998
KEGG: gka:GK1970 hypothetical protein.
       0.401
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.