STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_3164PFAM: periplasmic binding protein; KEGG: eli:ELI_10795 probable periplasmic substrate-binding protein. (309 aa)    
Predicted Functional Partners:
cobB
Hydrogenobyrinate a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L- glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.
 
  
 0.908
Rxyl_0416
PFAM: ABC transporter related; SMART: ATPase; KEGG: syn:slr1318 ABC-type iron(III) dicitrate transport system ATP-binding protein.
 
 
 0.865
Rxyl_0415
PFAM: transport system permease protein; KEGG: ana:all2585 iron(III) dicitrate transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.824
Rxyl_0414
PFAM: transport system permease protein; KEGG: ana:all2586 iron(III) dicitrate transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.819
Rxyl_3165
PFAM: CBS peptidase M50; KEGG: sil:SPO1636 SREBP protease/CBS domain; Belongs to the peptidase M50B family.
       0.782
Rxyl_3163
KEGG: tko:TK0480 metal-dependent phosphohydrolase, HD superfamily; TIGRFAM: uncharacterized domain HDIG; PFAM: metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD region.
       0.662
Rxyl_3166
PFAM: DNA-directed DNA polymerase 3'-5' exonuclease; KEGG: tpv:TP01_0386 hypothetical protein.
       0.568
Rxyl_3167
PFAM: GCN5-related N-acetyltransferase; KEGG: bur:Bcep18194_C6642 GCN5-related N-acetyltransferase.
       0.558
Rxyl_1177
PFAM: iron permease FTR1; KEGG: pfl:PFL_3255 membrane protein, putative.
   
  
 0.500
Rxyl_1977
uroporphyrinogen-III C-methyltransferase / uroporphyrinogen-III synthase; TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase Uroporphyrinogen III synthase HEM4; KEGG: mta:Moth_1248 uroporphyrin-III C-methyltransferase.
     
 0.434
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
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