STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_3205PFAM: TPR repeat Tetratricopeptide TPR_4 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: tbd:Tbd_0023 hypothetical protein with TPR repeat. (111 aa)    
Predicted Functional Partners:
Rxyl_3204
Hypothetical protein.
       0.779
Rxyl_3203
PFAM: protein of unknown function DUF92, transmembrane; KEGG: gvi:gll0900 hypothetical protein.
       0.776
leuS
TIGRFAM: leucyl-tRNA synthetase; KEGG: det:DET0194 leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.507
Rxyl_3161
PFAM: TPR repeat Tetratricopeptide TPR_4 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: mhu:Mhun_2406 tetratricopeptide TPR_2.
 
   
 0.414
Rxyl_2025
KEGG: sth:STH848 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase 5'-3' exonuclease; SMART: Helix-hairpin-helix motif, class 2.
  
    0.401
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.