Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rxyl_3205PFAM: TPR repeat Tetratricopeptide TPR_4 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: tbd:Tbd_0023 hypothetical protein with TPR repeat. (111 aa)    
Predicted Functional Partners:
Rxyl_3203
PFAM: protein of unknown function DUF92, transmembrane; KEGG: gvi:gll0900 hypothetical protein.
       0.777
Rxyl_3204
Hypothetical protein.
       0.777
Rxyl_0877
Carboxyl-terminal protease; KEGG: bld:BLi02281 carboxy-terminal processing protease; RBL02710; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF peptidase S41; Belongs to the peptidase S41A family.
  
 
 0.607
Rxyl_3161
PFAM: TPR repeat Tetratricopeptide TPR_4 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: mhu:Mhun_2406 tetratricopeptide TPR_2.
 
 
 
 0.580
leuS
TIGRFAM: leucyl-tRNA synthetase; KEGG: det:DET0194 leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.506
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
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