STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_3208PFAM: Lytic transglycosylase, catalytic; KEGG: tfu:Tfu_0480 similar to cell wall-associated hydrolase (invasion-associated proteins). (387 aa)    
Predicted Functional Partners:
Rxyl_3210
Chromosome segregation ATPase; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: sth:STH3333 ParA, ParA family ATPase.
       0.697
Rxyl_3209
Chromosome segregation DNA-binding protein; TIGRFAM: parB-like partition proteins; PFAM: ParB-like nuclease; KEGG: sth:STH3332 ParBc, ParB-like nuclease domain; Belongs to the ParB family.
       0.694
rsmG
Methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
       0.610
Rxyl_2312
PFAM: glycosyl transferase, family 2; KEGG: tfu:Tfu_1730 hypothetical protein.
  
     0.539
Rxyl_1474
KEGG: cef:CE1727 hypothetical protein.
  
     0.516
Rxyl_0633
KEGG: sma:SAV2049 hypothetical protein.
  
     0.505
Rxyl_0149
KEGG: gvi:glr3825 hypothetical protein.
  
     0.491
rpmH
PFAM: ribosomal protein L34; KEGG: mhp:MHP7448_0678 50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
     
 0.489
Rxyl_3213
Protein translocase subunit yidC; PFAM: 60 kDa inner membrane insertion protein; KEGG: pca:Pcar_3143 hypothetical protein.
       0.480
Rxyl_0682
KEGG: gvi:glr3825 hypothetical protein.
  
     0.475
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
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