Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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[Homology]
Score
KRG57938.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (93 aa)    
Predicted Functional Partners:
KRG58000.1
5'-nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.461
KRG57939.1
Potassium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.413
Your Current Organism:
Stenotrophomonas koreensis
NCBI taxonomy Id: 266128
Other names: DSM 17805, JCM 13256, KCTC 12211, S. koreensis, Stenotrophomonas koreensis Yang et al. 2006, Stenotrophomonas sp. DSM 17805, Stenotrophomonas sp. TR6-01, strain TR6-01
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