STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pepQProline dipeptidase; Splits dipeptides with a prolyl residue in the C-terminal position. (443 aa)    
Predicted Functional Partners:
KRG55720.1
Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.648
KRG55753.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.644
guaB
Inosine-5-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
   
   0.610
KRG55754.1
Xaa-Pro aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
0.476
KRG60091.1
Aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.470
gcvT
Glycine cleavage system protein T; The glycine cleavage system catalyzes the degradation of glycine.
  
 0.461
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
 
 
   0.432
KRG59848.1
Peptidase M13; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.429
KRG59615.1
Peptidase M13; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.429
map
Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
     
 0.426
Your Current Organism:
Stenotrophomonas koreensis
NCBI taxonomy Id: 266128
Other names: DSM 17805, JCM 13256, KCTC 12211, S. koreensis, Stenotrophomonas koreensis Yang et al. 2006, Stenotrophomonas sp. DSM 17805, Stenotrophomonas sp. TR6-01, strain TR6-01
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