STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_0019Putative beta-lactamase-like protein. (257 aa)    
Predicted Functional Partners:
Rmet_2637
Hemerythrin-like protein.
 
  
 0.715
hemN-2
Coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen-independent; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 0.587
Rmet_0020
Fumarylacetoacetate hydrolase family protein.
  
    0.583
Rmet_0018
Glutathione peroxidase; Belongs to the glutathione peroxidase family.
  
  
 0.499
ompW1
Porin, OmpW family.
   
    0.431
ompW2
Porin, OmpW-family.
   
    0.429
hmp
Nitric oxide dioxygenase; Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (NO oxygenase) (NOD); Belongs to the globin family.
  
  
 0.405
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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