STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_0047Dienelactone hydrolase or related enzyme. (356 aa)    
Predicted Functional Partners:
Rmet_3475
Putative ABC-type branched-chain amino acid transport system, periplasmic component.
 
    0.754
gatA1
Glutamyl/Aspartyl-tRNA(Gln/Asp) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).
  
    0.675
Rmet_0048
Conserved hypothetical protein.
       0.674
Rmet_0112
Conserved hypothetical signal peptide protein.
  
    0.671
pilI
Type IV pilus signal transduction protein PilI.
  
    0.662
Rmet_0075
Conserved hypothetical protein.
  
     0.642
Rmet_1198
Putative 20S proteasome, A and B subunits.
  
    0.611
Rmet_0577
Putative nucleoside 2-deoxyribosyltransferase.
  
     0.600
Rmet_0388
Conserved hypothetical protein.
  
    0.591
pilL2
Type IV pilus protein histidine kinase/response regulator hybrid PilL.
  
     0.571
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.