STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_0082Transcriptional regulator, IclR-family. (285 aa)    
Predicted Functional Partners:
Rmet_2586
Transcriptional regulator, IclR-family.
  
    0.765
Rmet_1818
Transcriptional regulator (IclR family).
  
    0.758
Rmet_2600
Regulatory protein, IclR family.
  
     0.756
Rmet_1817
Transcriptional regulator, IclR-family.
  
     0.754
Rmet_1205
Transcriptional regulator, IclR family.
  
    0.752
Rmet_2652
Transcriptional regulator, IclR-family.
  
    0.731
Rmet_0840
IclR-family transcriptional regulator.
  
    0.725
Rmet_0083
Conserved hypothetical protein.
  
    0.633
mhpD2
2-Oxopent-4-enoate hydratase.
       0.577
Rmet_0084
Predicted hydrolase or acyltransferase (alpha/beta hydrolase superfamily).
  
  
 0.524
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.