STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_0085Conserved hypothetical protein. (85 aa)    
Predicted Functional Partners:
Rmet_0083
Conserved hypothetical protein.
 
    0.764
Rmet_2985
Putative barstar (Ribonuclease inhibitor).
  
    0.759
Rmet_2491
Conserved hypothetical protein.
  
     0.757
Rmet_2706
Conserved hypothetical protein; putative transmembrane protein.
  
    0.742
Rmet_0306
Conserved hypothetical protein.
  
     0.738
Rmet_0235
Conserved hypothetical protein.
  
    0.726
Rmet_1233
Hypothetical protein.
  
    0.722
arnT
4-Amino-4-deoxy-L-arabinose transferase or related glycosyltransferase of PMT family.
  
     0.709
Rmet_2770
Putative lipoprotein.
  
     0.704
Rmet_0919
Lipoprotein.
  
     0.701
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.