STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_01092-hydroxychromene-2-carboxylate isomerase. (219 aa)    
Predicted Functional Partners:
Rmet_0111
Conserved hypothetical protein; Belongs to the UPF0225 family.
  
    0.787
Rmet_0110
HAD-superfamily hydrolase, subfamily IA.
  
    0.783
Rmet_0112
Conserved hypothetical signal peptide protein.
  
    0.594
Rmet_0108
acyl-CoA dehydrogenase, short-chain specific.
  
    0.551
Rmet_0107
Short-chain dehydrogenase/reductase SDR.
       0.525
Rmet_0113
Enoyl-CoA hydratase/carnithine racemase.
       0.467
Rmet_1137
Glutathione S-transferase-like protein.
  
    0.432
atoB
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
    0.424
matA
Malonyl-CoA decarboxylase.
 
    0.409
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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