STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_0128Putative ferric uptake regulator, Fur-family; Belongs to the Fur family. (169 aa)    
Predicted Functional Partners:
yjiA
Cobalamin synthesis protein, P47K (putative GTPase).
     
 0.656
dehH2
Haloacetate dehalogenase.
       0.539
rpoA
RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.525
gltB
Glutamate synthase, large subunit.
     
 0.473
Rmet_0075
Conserved hypothetical protein.
 
    0.459
dksA
DnaK suppressor protein; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.
  
  
 0.453
ahpC
Alkyl hydroperoxide reductase, peroxiredoxin (Thioredoxin-dependent peroxide reductase).
  
  
 0.449
Rmet_2419
Conserved hypothetical protein; putative transmembrane protein.
  
    0.449
Rmet_2654
Antioxidant protein LsfA.
  
  
 0.449
Rmet_1127
Conserved hypothetical protein.
  
  
 0.448
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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