STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_0145Conserved hypothetical protein. (272 aa)    
Predicted Functional Partners:
Rmet_2528
Conserved hypothetical protein.
  
 
 0.580
metW
Methionine biosynthesis protein MetW.
  
    0.557
metX
Homoserine O-acetyltransferase; Transfers a succinyl group from succinyl-CoA to L-homoserine, forming succinyl-L-homoserine.
  
    0.546
Rmet_3530
Conserved hypothetical protein.
  
     0.546
Rmet_2641
Putative major facilitator superfamily (MFS_1) transporter.
  
    0.534
fadB
3-hydroxyacyl-CoA dehydrogenase; Fused 3-hydroxybutyryl-CoA epimerase and delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase and enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase.
 
 
 0.492
Rmet_2527
MaoC-like dehydratase.
  
 
 0.483
Rmet_1895
Thiamine pyrophosphate-requiring enzyme (multidomain protein).
  
 
 0.474
Rmet_0386
Putative 3-hydroxyacyl-coa dehydrogenase oxidoreductase protein.
  
 
 0.470
Rmet_3218
Putative Na+ driven multidrug efflux pump (MatE-efflux family protein).
 
    0.465
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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