STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
crp1Transcriptional regulator, CRP-family. (259 aa)    
Predicted Functional Partners:
hoxI
Cyclic nucleotide-binding domain (cNMP-BD) protein.
  
 
  0.924
Rmet_0214
long-chain-fatty-acid--CoA ligase (Long-chain acyl-CoA synthetase).
 
  
 0.759
Rmet_0218
ABC-type transporter, periplasmic component: HAAT family.
 
    0.533
Rmet_0217
ABC-type transporter, livM-like permease component; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.514
evgS
Hybrid sensory histidine kinase in two-component regulatory system.
  
 
 0.509
Rmet_0591
Putative signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
 
 
 0.508
livG8
Leucine/isoleucine/valine transporter subunit, ATP-binding component of ABC superfamily.
  
    0.504
Rmet_0216
ABC-type transporter, livH-like permease component; Belongs to the binding-protein-dependent transport system permease family.
 
    0.504
Rmet_0264
Conserved hypothetical protein; hypothetical membrane associated protein.
  
     0.458
rpoB
RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.453
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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