STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_0214long-chain-fatty-acid--CoA ligase (Long-chain acyl-CoA synthetase). (654 aa)    
Predicted Functional Partners:
livG8
Leucine/isoleucine/valine transporter subunit, ATP-binding component of ABC superfamily.
 
    0.951
Rmet_0216
ABC-type transporter, livH-like permease component; Belongs to the binding-protein-dependent transport system permease family.
 
    0.912
Rmet_0217
ABC-type transporter, livM-like permease component; Belongs to the binding-protein-dependent transport system permease family.
 
    0.909
Rmet_0218
ABC-type transporter, periplasmic component: HAAT family.
 
    0.890
paaK
Phenylacetate--CoA ligase.
 
    0.858
livF8
Leucine/isoleucine/valine transporter subunit, ATP-binding component of ABC superfamily.
 
    0.855
Rmet_2525
AMP-dependent synthetase and ligase.
 
 
0.830
Rmet_3215
AMP-dependant long-chain-fatty-acid-CoA ligase.
 
 
0.830
fadD-2
acyl-CoA synthetase (long-chain-fatty-acid-CoA ligase).
  
 
0.817
crp1
Transcriptional regulator, CRP-family.
 
  
 0.759
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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