STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_0306Conserved hypothetical protein. (208 aa)    
Predicted Functional Partners:
lptB
Probable ABC transporter ATP-binding protein.
  
 0.998
lptA
Conserved hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane.
 
 
 0.987
yjgQ
Predicted permease.
 
 
 0.932
yjgP
Predicted permease.
 
 
 0.925
kdsD2
D-arabinose 5-phosphate isomerase; Belongs to the SIS family. GutQ/KpsF subfamily.
  
  
 0.873
Rmet_2628
Conserved hypothetical protein.
  
     0.749
Rmet_0085
Conserved hypothetical protein.
  
     0.738
Rmet_0095
Conserved hypothetical protein.
  
    0.737
Rmet_3120
Conserved hypothetical protein.
  
     0.735
Rmet_0235
Conserved hypothetical protein.
  
     0.728
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.