STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_0337Putative regulatory protein, IclR family. (261 aa)    
Predicted Functional Partners:
Rmet_0336
Putative regulatory protein, IclR family.
 
    
0.819
Rmet_0338
Beta-lactamase-like protein.
 
     0.762
Rmet_0340
Conserved hypothetical protein.
 
     0.708
Rmet_0339
Monooxygenase, FAD-binding:FAD dependent oxidoreductase.
 
   
 0.702
Rmet_3511
ABC-type transporter, ATPase and permease components; Belongs to the binding-protein-dependent transport system permease family.
  
     0.576
Rmet_2820
ABC-type transporter, periplasmic component: HAAT family.
  
    0.562
Rmet_3513
ABC-type transporter, periplasmic component.
  
     0.546
Rmet_3512
ABC-type transporter, permease component; Belongs to the binding-protein-dependent transport system permease family.
  
     0.487
Rmet_1225
Alpha/beta hydrolase fold protein.
  
  
 0.468
Rmet_0335
Putative transglycosylase; Murein-degrading enzyme that degrades murein glycan strands and insoluble, high-molecular weight murein sacculi, with the concomitant formation of a 1,6-anhydromuramoyl product. Lytic transglycosylases (LTs) play an integral role in the metabolism of the peptidoglycan (PG) sacculus. Their lytic action creates space within the PG sacculus to allow for its expansion as well as for the insertion of various structures such as secretion systems and flagella. In the N-terminal section; belongs to the bacterial solute- binding protein 3 family.
       0.454
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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