STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_0347RND efflux system, outer membrane lipoprotein, NodT family. (488 aa)    
Predicted Functional Partners:
Rmet_0350
Secretion protein (HlyD-related).
  
 
 0.858
Rmet_0348
ABC-type multidrug transporter, permease component.
     
 0.768
Rmet_0349
ABC-type multidrug transporter, ATPase component.
     
 0.768
Rmet_0351
Transcriptional regulator, TetR-family.
     
 0.727
mdtA
Multidrug efflux system, subunit A; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.707
mdtA-2
Multidrug resistance protein mdtA precursor (Multidrug transporter mdtA); Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.697
acrA
Cation/multidrug efflux system, mebrane-fusion component; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.691
acrA-2
Multidrug efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.661
emrA
Multidrug efflux system (MFS family).
 
 
 0.633
oprB
Carbohydrate-selective porin.
 
   
 0.611
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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