STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_0348ABC-type multidrug transporter, permease component. (384 aa)    
Predicted Functional Partners:
Rmet_0349
ABC-type multidrug transporter, ATPase component.
  
 0.983
Rmet_0350
Secretion protein (HlyD-related).
 
  
 0.953
Rmet_1277
Putative transporter fused subunits of ABC superfamily: ATP-binding components (fragment).
  
 0.811
Rmet_0351
Transcriptional regulator, TetR-family.
 
    0.782
Rmet_0347
RND efflux system, outer membrane lipoprotein, NodT family.
     
 0.768
nodI
Nod factor export ATP-binding protein I (Nodulation ATP-binding protein I); Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4- linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system.
  
 0.595
rbbA
Fused ribosome-associated ATPase: ATP-binding protein; ATP-binding protein; membrane protein.
 
 
0.583
Rmet_1683
Putative transporter subunit: membrane component of ABC superfamily.
 
 
 
0.546
lptB
Probable ABC transporter ATP-binding protein.
 
 
 0.521
ybhS
Putative transporter subunit: permease component of ABC superfamily.
  
 
 
0.515
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.