STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oprBCarbohydrate-selective porin. (492 aa)    
Predicted Functional Partners:
Rmet_3542
Hypothetical protein.
  
  
  0.676
proP
Proline/glycine betaine transporter: Permease of the major facilitator superfamily (MFS); MFS transporter, MHS family.
      
 0.671
Rmet_2538
Outer membrane protein (porin).
  
 
 0.669
Rmet_1733
Outer membrane protein (porin).
  
 
 0.653
Rmet_0880
Putative outer membrane protein (porin).
  
 
 0.637
Rmet_1628
Putative transmembrane outer membrane porin signal peptide protein.
  
  
 0.612
Rmet_0347
RND efflux system, outer membrane lipoprotein, NodT family.
 
   
 0.611
Rmet_1907
Outer membrane protein (porin).
  
 
 0.609
Rmet_3218
Putative Na+ driven multidrug efflux pump (MatE-efflux family protein).
  
    0.561
Rmet_1639
Outer membrane protein (porin).
     
 0.558
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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