STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_0397Transcriptional regulator, LysR-family; Belongs to the LysR transcriptional regulatory family. (329 aa)    
Predicted Functional Partners:
Rmet_0894
Transcriptional regulator, LysR-family; Belongs to the LysR transcriptional regulatory family.
  
   
 0.736
Rmet_0699
Transcriptional regulator, LysR-family; Belongs to the LysR transcriptional regulatory family.
  
    0.690
Rmet_1939
Transcriptional regulator, lysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.627
Rmet_1795
Transcriptional regulator, LysR-family; Belongs to the LysR transcriptional regulatory family.
  
    0.618
Rmet_2126
Transcriptional regulator, LysR-family; Belongs to the LysR transcriptional regulatory family.
  
     0.616
Rmet_3416
Transcriptional regulator, LysR-family; Belongs to the LysR transcriptional regulatory family.
  
    0.555
gdhA
Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 
 0.542
Rmet_0396
Putative cysteine dioxygenase type I.
       0.532
Rmet_3555
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.518
Rmet_1185
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.515
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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