STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_0413Conserved hypothetical protein. (164 aa)    
Predicted Functional Partners:
Rmet_0412
Putative DNA binding; transmembrane protein.
 
    0.915
Rmet_3119
Conserved hypothetical protein; putative peptidase M23-family.
 
  
 0.585
erpA
Iron-sulfur cluster assembly accessory protein (yadR); Required for insertion of 4Fe-4S clusters.
       0.572
pilJ
Type IV pilus transmembrane protein PilJ.
  
    0.545
pilL2
Type IV pilus protein histidine kinase/response regulator hybrid PilL.
 
     0.516
rpsI
30S ribosomal subunit protein S9; Belongs to the universal ribosomal protein uS9 family.
       0.470
rplM
50S ribosomal subunit protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
    0.459
Rmet_1167
Transcriptional regulator, MerR family.
 
  
 0.444
pilI
Type IV pilus signal transduction protein PilI.
 
    0.431
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.