STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacBD-Alanyl-D-alanine carboxypeptidase, S13 family. (518 aa)    
Predicted Functional Partners:
dac
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
   
 
 0.916
ldcA
L,D-carboxypeptidase A.
 
 
 0.727
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
  
 
 0.698
Rmet_0509
Conserved hypothetical protein.
  
    0.571
ftsI1
Peptidoglycan glycosyltransferase (penicillin-binding domain).
     
 0.564
arp3
Ankyrin repeat protein (ANK).
 
 
 0.527
Rmet_2634
Ankyrin repeat harboring signal peptide protein.
   
 
 0.457
galM
Aldose 1-epimerase.
  
    0.415
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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