STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_0540Putative regulatory protein, TetR family. (247 aa)    
Predicted Functional Partners:
Rmet_1600
Conserved hypothetical protein.
  
    0.663
Rmet_3542
Hypothetical protein.
  
    0.652
addB
ATP-dependent nuclease, subunit B.
 
     0.592
Rmet_3051
Conserved hypothetical protein.
  
    0.554
addA
UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily.
  
     0.522
Rmet_0474
Putative lipidA core O-antigen ligase transmembrane protein.
  
    0.510
Rmet_3344
Conserved hypothetical protein.
  
    0.508
sodB
Superoxide dismutase, Fe; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
  
 0.491
Rmet_2687
Putative Type IV pili related protein.
  
    0.463
Rmet_0541
Major facilitator superfamily (MFS_1) transporter.
       0.459
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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