STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmet_0548Sigma54 specific transcriptional regulator, Fis-like protein. (514 aa)    
Predicted Functional Partners:
rpoN
RNA polymerase sigma 54 (sigma N) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.804
Rmet_0549
Mg2+ transporter protein, CorA-like protein.
  
    0.714
Rmet_0547
Putative membrane protein.
 
  
 0.633
Rmet_3559
Two-component system response regulator(CheY-like receiver).
 
      0.543
Rmet_0550
Conserved hypothetical protein.
       0.492
bdhA
D-beta-hydroxybutyrate dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.467
evgS
Hybrid sensory histidine kinase in two-component regulatory system.
     
 0.454
Rmet_0591
Putative signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
     
 0.423
hoxA
Hydrogenase transcriptional regulatory protein.
 
      0.418
Your Current Organism:
Cupriavidus metallidurans
NCBI taxonomy Id: 266264
Other names: C. metallidurans CH34, Cupriavidus metallidurans CH34, Cupriavidus metallidurans str. CH34, Cupriavidus metallidurans strain CH34, Ralstonia metallidurans CH34, Wautersia metallidurans CH34
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